Resources

Software

  • NHP-BIDS is a NiPype based pipeline for (pre-)processing of NHP-fMRI data in accordance with BIDS It is available on GitHub.
  • NHP-Freesurfer is a shell-based pipeline written in Jupyter notebooks for the segmentation and surface generation of NHP MRI data. It is available on GitHub.
  • RheMAP is a package on non-linear registrations across a set of common rhesus macaque brain templates. Code is available on GitHub, warp-files on Zenodo.DOI
  • PRIME-RE is a community driven platform for sharing resources related to NHP neuroimaging. Find it here.

Data

  • PRIME-DE is a platform for the sharing of NHP neuroimaging data. The future is collaborative! Find it here.
  • RheMAP is a package on non-linear registrations across a set of common rhesus macaque brain templates. Code is available on GitHub, warp-files on Zenodo. DOI
  • Neurovault is a place where researchers can publicly store and share unthresholded statistical maps, parcellations, and atlases produced by MRI and PET studies. Find the website here. It facilitates both human and animal brains and has built-in templates for macaque fMRI results